Image Analysis

imaging.usegalaxy.eu

Commits all-time: 1178

from 48 contributors

Most frequent contributors:

kostrykin

Commits: 222

Contributed to: BMCV/galaxy-image-analysis and

bgruening

Commits: 178

Contributed to: bgruening/galaxytools and

znerp

Commits: 174

Contributed to: BMCV/galaxy-image-analysis

lldelisle

Commits: 97

Contributed to: lldelisle/tools-lldelisle and

ThomasWollmann

Commits: 83

Contributed to: BMCV/galaxy-image-analysis

gregvonkuster

Commits: 75

Contributed to: bgruening/galaxytools

And also: sunyi000, beatrizserrano, foellmelanie, rmassei, bernt-matthias, npinter, qgao-hd, bugraoezdemir, simonbray, hexylena, gxydevbot, nsoranzo, gallardoalba, mvdbeek, pavanvidem, elischberg, zwanli, mmiladi, yhoogstrate, reid-wagner, thawn, fubar2, tensionhead, SaimMomin12, anuprulez, planemo-autoupdate, Delphine-L, willemdek11, qiagu, tdudgeon, heylf, jfallmann, bebatut, gianlucacorrado, smithcr, TorHou, MarenStillger, CarlosHorro, alliecreason, rlibouba, TomHarrop, tuncK

Commits last year: 213

Most frequent contributors:

kostrykin

Commits: 84

Contributed to: BMCV/galaxy-image-analysis and

rmassei

Commits: 32

Contributed to: Helmholtz-UFZ/galaxy-tools and

lldelisle

Commits: 24

Contributed to: lldelisle/tools-lldelisle and

bernt-matthias

Commits: 20

Contributed to: Helmholtz-UFZ/galaxy-tools and

bgruening

Commits: 17

Contributed to: BMCV/galaxy-image-analysis and

npinter

Commits: 10

Contributed to: galaxyproteomics/tools-galaxyp

And also: gxydevbot, bugraoezdemir, pavanvidem, sunyi000, fubar2, SaimMomin12, anuprulez, planemo-autoupdate, elischberg, hexylena, MarenStillger, reid-wagner, rlibouba, TomHarrop, mvdbeek

New contributors:

rmassei

Commits: 32

Contributed to: Helmholtz-UFZ/galaxy-tools and

pavanvidem

Commits: 2

Contributed to: bgruening/galaxytools

fubar2

Commits: 2

Contributed to: galaxyproject/tools-iuc

SaimMomin12

Commits: 1

Contributed to: bgruening/galaxytools

anuprulez

Commits: 1

Contributed to: bgruening/galaxytools

planemo-autoupdate

Commits: 1

Contributed to: bgruening/galaxytools

MarenStillger

Commits: 1

Contributed to: galaxyproteomics/tools-galaxyp

rlibouba

Commits: 1

Contributed to: galaxyproject/tools-iuc

TomHarrop

Commits: 1

Contributed to: galaxyproject/tools-iuc

Community graph:

Distribution of repositories:

Repositories: 113 tools

(59)

  1. 2d_auto_local_threshold
  2. 2d_auto_threshold
  3. 2d_feature_extraction
  4. 2d_filter_segmentation_by_features
  5. 2d_histogram_equalization
  6. 2d_simple_filter
  7. 2d_split_binaryimage_by_watershed
  8. 3d_tensor_feature_dimension_reduction
  9. anisotropic-diffusion
  10. anisotropic_diffusion
  11. background_removal
  12. bfconvert
  13. binary2labelimage
  14. binaryimage2points
  15. bioformats2raw
  16. colocalization_viz
  17. color-deconvolution
  18. color_deconvolution
  19. colorize_labels
  20. concat_channels
  21. coordinates_of_roi
  22. count_objects
  23. curve_fitting
  24. detection_viz
  25. image_info
  26. image_math
  27. image_registration_affine
  28. imagecoordinates_flipaxis
  29. label_to_binary
  30. labelimage2points
  31. landmark_registration
  32. landmark_registration_ls
  33. mahotas-features
  34. mahotas_features
  35. mergeneighboursinlabelimage
  36. morphological_operations
  37. orientationpy
  38. overlay_images
  39. overlay_moving_and_fixed_image
  40. overlay_segmentation_mask
  41. permutate_axis
  42. plantseg
  43. points2binaryimage
  44. points2labelimage
  45. points_association_nn
  46. projective_transformation
  47. projective_transformation_points
  48. repeat_channels
  49. rfove
  50. scale_image
  51. segmetrics
  52. slice_image
  53. split_labelmap
  54. spot_detection_2d
  55. superdsm
  56. visceral-evaluatesegmentation
  57. visceral_evaluatesegmentation
  58. voronoi_tessellation
  59. wsi_extract_top_view

(35)

  1. bia-ftplinks
  2. bioimaging
  3. cellpose
  4. cellprofiler
  5. cellprofiler_v4
  6. graphicsmagick
  7. image_processing
  8. imagej2
  9. imagej2_adjust_threshold_binary
  10. imagej2_analyze_particles_binary
  11. imagej2_analyze_skeleton
  12. imagej2_binary_to_edm
  13. imagej2_bunwarpj_adapt_transform
  14. imagej2_bunwarpj_align
  15. imagej2_bunwarpj_compare_elastic
  16. imagej2_bunwarpj_compare_elastic_raw
  17. imagej2_bunwarpj_compare_raw
  18. imagej2_bunwarpj_compose_elastic
  19. imagej2_bunwarpj_compose_raw
  20. imagej2_bunwarpj_compose_raw_elastic
  21. imagej2_bunwarpj_convert_to_raw
  22. imagej2_bunwarpj_elastic_transform
  23. imagej2_bunwarpj_raw_transform
  24. imagej2_convert_format
  25. imagej2_create_image
  26. imagej2_find_edges
  27. imagej2_find_maxima
  28. imagej2_make_binary
  29. imagej2_noise
  30. imagej2_shadows
  31. imagej2_sharpen
  32. imagej2_skeletonize3d
  33. imagej2_smooth
  34. imagej2_watershed_binary
  35. woundhealing

(9)

  1. hyperstack_to_bleach_corrected_movie
  2. incucyte_stack_and_upload_omero
  3. measure_gastruloids
  4. omero_clean_rois_tables
  5. omero_get_children_ids
  6. omero_get_full_images
  7. omero_hyperstack_to_fluo_measurements_on_gastruloid
  8. omero_hyperstack_to_gastruloid_measurements
  9. upload_roi_and_measures_to_omero

(5)

  1. msi_filtering
  2. msi_ion_images
  3. msi_segmentation
  4. msi_spectra_plots
  5. qupath_roi_splitter

(4)

  1. omero
  2. omero_basic_upload
  3. omero_metadata_upload
  4. omero_upload

(1)

  1. spyboat